Background: Therapy for a first primary neoplasm (FPN) in childhood with high doses of ionizing radiation is an established risk factor for second primary neoplasms (SPN). An association between exposure to low doses and childhood cancer is also suggested; however, results are inconsistent. As only subgroups of children with FPNs develop SPNs, an interaction between radiation, genetic, and other risk factors is presumed to influence cancer development.
Objective: Therefore, the population-based, nested case-control study KiKme aims to identify differences in genetic predisposition and radiation response between childhood cancer survivors with and without SPNs as well as cancer-free controls.
Methods: We conducted a population-based, nested case-control study KiKme. Besides questionnaire information, skin biopsies and saliva samples are available. By measuring individual reactions to different exposures to radiation (eg, 0.05 and 2 Gray) in normal somatic cells of the same person, our design enables us to create several exposure scenarios for the same person simultaneously and measure several different molecular markers (eg, DNA, messenger RNA, long noncoding RNA, copy number variation).
Results: Since 2013, 101 of 247 invited SPN patients, 340 of 1729 invited FPN patients, and 150 of 246 invited cancer-free controls were recruited and matched by age and sex. Childhood cancer patients were additionally matched by tumor morphology, year of diagnosis, and age at diagnosis. Participants reported on lifestyle, socioeconomical, and anthropometric factors, as well as on medical radiation history, health, and family history of diseases (n=556). Primary human fibroblasts from skin biopsies of the participants were cultivated (n=499) and cryopreserved (n=3886). DNA was extracted from fibroblasts (n=488) and saliva (n=510).
Conclusions: This molecular-epidemiological study is the first to combine observational epidemiological research with standardized experimental components in primary human skin fibroblasts to identify genetic predispositions related to ionizing radiation in childhood and SPNs. In the future, fibroblasts of the participants will be used for standardized irradiation experiments, which will inform analysis of the case-control study and vice versa. Differences between participants will be identified using several molecular markers. With its innovative combination of experimental and observational components, this new study will provide valuable data to forward research on radiation-related risk factors in childhood cancer and SPNs.
International Registered Report Identifier (IRRID): DERR1-10.2196/32395
Childhood cancer is defined as a malignant neoplasm or any neoplasm in the central nervous system occurring in children and adolescents before the age of 20 years . Worldwide, the age-standardized incidence rate (world standard) is 152.8 per million person-years in those aged 0 to 19 years, is slightly higher in boys than in girls, and varies for different diagnostic groups dependent on age and region [ ]. Risk factors for most childhood cancers remain largely unknown [ ]. Common genetic susceptibility with low risk and rare genetic disorders with high risk explain less than 10% of the cases [ - ]. Corresponding with the current state of science, the immune system also plays an important role in the development of cancer [ ], and several environmental factors [ - ], such as early infections [ ] and vaccination [ ], have been suggested but not established to be protective by modulating immunological pathways, in particular for childhood leukemia. In contrast, specific chemical substances such as benzene are established risk factors for the development of leukemia and antineoplastic agents (eg, DNA alkylating agents, topoisomerase II inhibitors, doxorubicin) for the development of acute myeloid leukemia and sarcomas in childhood [ ]. However, these substances do not constitute the major part in the development of childhood cancer, since only a minority of children is exposed to such chemical carcinogens [ ].
Exposure to high doses of ionizing radiation, either due to nuclear disasters  or in cancer therapies [ - ], is a rare and known environmental risk factor for acute myeloid leukemia in childhood [ ] and second primary neoplasms (SPNs) [ , , - , ]. Indeed gene-radiation interactions are assumed to be involved in the etiology of childhood cancer [ , ] and SPNs [ - ] as well. Besides high-dose ionizing radiation, the magnitude of the risk for first primary neoplasms (FPNs) in childhood from very low doses (≤0.05 Gray [Gy]) is still uncertain and difficult to resolve via conventional epidemiological studies [ ]. Low doses of ionizing radiation are commonly used in medical diagnostics, like computed tomography examinations [ ], and regarded as a risk factor in addition to the directly exposed treatment volume, where high doses of ionizing radiation are applied during radiation therapy [ ]. Exposure to low doses also occurs during the staging procedure of neoplasms via computed tomography examinations and follow-up after treatment. In utero exposure to ionizing radiation during abdominal X-rays of pregnant women was consistently observed to be a risk factor for acute leukemia in many epidemiological studies conducted in the 1950s and 1960s [ - ]. Today, X-ray examinations during pregnancy are conducted using lower radiation doses [ ], and recent studies were not able to identify any increased risk anymore [ ]. Similarly, a recent study on cancer incidence after exposure to postnatal diagnostic X-rays did not find an increased risk for leukemia, lymphoma, central nervous system tumors, blastomas, or sarcomas [ ]. However, data on the effect of low doses are still scarce and inconsistent due to missing direct biological human evidence [ , ]. Additionally, observational studies are often small and may not show proper confounder control [ - ].
To address these open questions and challenges with a more powerful approach, we designed a nested, molecular-epidemiological, case-control study that combines observational epidemiological research with standardized experimental components in primary human fibroblasts. We want to identify genetic predispositions related to the cellular response to high and low doses of ionizing radiation in SPN cases compared with FPN controls first and in childhood cancer cases compared with cancer-free controls second. This publication focuses on the description of the innovative study design and its potential use in research as well as on procedures of sampling and proportions of participation.
Aim and Study Design
The population-based, nested case-control study KiKme (German: “Krebserkrankungen im Kindesalter und molekulare Epidemiologie”; English: “Cancer in childhood and molecular-epidemiology”) was designed to analyze genetic predispositions and other molecular-biological factors associated with ionizing radiation in primary human fibroblasts from former childhood cancer patients (SPNs and FPNs) and cancer-free controls. Applying a molecular-epidemiological, case-control study design, using primary human skin fibroblasts as a model of normal human somatic tissue enables us to measure individual changes in reaction to different radiation exposures on a cellular level and to conduct an informed search for genomic causes in fibroblasts from the same person simultaneously . The combination with observational data from questionnaires and the linkage of therapy data on chemo- and radiotherapy from treating hospitals complete the study and allow us to control for known confounding factors.
More than 70,000 former childhood cancer patients are registered in the German Childhood Cancer Registry . This large cohort provides the basis for the nested case-control study KiKme. Since 1980, this registry has recorded population-based childhood cancer cases occurring in children younger than 15 years old in former Western Germany with almost complete coverage. Since 1991, cases from former Eastern Germany are recorded as well. In 2009, the age limit for recorded childhood cancer was raised from under 15 years old to under 18 years old [ ]. Diagnoses of childhood cancer are validated in cooperation with treating hospitals and an open-end follow-up is conducted with an emphasis on obtaining information on SPNs [ ]. The cohort in which our case-control study KiKme was nested includes children with only 1 cancer diagnosis (FPN) as well as with multiple cancer diagnoses over time (SPN). Subjects were eligible if they were diagnosed with an FPN in childhood, were at least 18 years old (as of June 2012), showed survival after cancer diagnosis for 1 year or more, and were still alive when the study was performed. Additionally, an address and an agreement for data storage in the German Childhood Cancer Registry had to be available. The inclusion criteria resulted in a maximum of 1976 available former childhood cancer patients (247 SPNs with 1729 matching FPNs). All these former childhood cancer patients were initially contacted by the German Childhood Cancer Registry in consideration with the guidelines of the Association for Pediatric Oncology and Hematology in Germany.
For the pilot study of this project, 48 former childhood cancer patients with any morphology of FPN and SPN were included. Within the main study period, only participants (n=392) with an FPN of the most common childhood cancers of the International Classification of Childhood Cancer - third edition (ICCC-3)  were recruited: leukemia ICCC-3 I(a), I(b), I(c), I(d); lymphoma ICCC-3 II(a), II(b), II(c); and tumors of the central nervous system ICCC-3 III(a), III(b), III(c), III(d), IV(a). Cancer sites of the second primary diagnosis had to be at a potentially radiation-related site: thyroid carcinoma ICCC-3 XI(b); skin carcinoma ICCC-3 XI(e); leukemia ICCC-3 I(a), I(b), I(d) (all causally related to radiation [ ]); or malignant melanoma ICCC-3 XI(d) (potentially related to radiation [ ]). The number of possible SPN cases meeting the inclusion criteria was limited by the quantity of potential SPN participants who were still alive (n=247). Potential FPN controls (n=1729) were matched by age at recruitment (maximal age range of 5 years), sex, cancer morphology (ICCC-3), year of diagnosis (maximal range of 7 calendar years), and age at diagnosis (maximal age range of 4 years) to available SPN cases using a risk set sampling approach. Taking the year of diagnosis into account enables us to control for changes in therapy procedures. To be included as a possible FPN control, no SPN diagnosis had to exist at the date of the second diagnosis of the corresponding SPN case, and the FPN control had to be alive.
In order to not only be able to compare genetic predispositions related to ionizing radiation in SPN cases and FPN controls, we also recruited cancer-free controls for each matching group in an additional hospital-based study arm in the Department of Orthopedics and Traumatology of the University Medical Center Mainz. They were matched by sex and within a maximal 10-year age range at the time of the recruitment to participating SPN cases and FPN controls. Cancer-free controls were mainly recruited from patients who were hospitalized for elective orthopedic surgery after an accident. Cancer-free controls with severe or chronic diseases (eg, cancer, Alzheimer’s disease, multiple sclerosis, cardiovascular disease, diabetes) were excluded from participation due to a possible association with shared genetic predispositions and cancer development .
Procedures and Survey Modules
The study combines information from questionnaires and molecular-biological experiments including investigations on radiation-induced effects using primary human skin fibroblasts derived from skin biopsies of the participants. In addition, saliva samples were collected as a second, independent source for DNA. Participants who reported being infected with severe infectious diseases (eg, hepatitis or AIDS) were excluded from a skin biopsy and saliva collection to avoid any transmission in the laboratory. Also, skin biopsies were not conducted if participants suffered from other severe diseases (eg, hemophilia) to prevent them from suffering adverse health consequences.
Most study participants (SPN, FPN, cancer-free control) answered a self-completed questionnaire to assess socioeconomic and anthropometric factors, as well as information on lifestyle, medical history, and health. The general questionnaire contained questions on birth characteristics, ethnic origin, anthropometric factors, education, current life circumstances, smoking, drinking, diseases, and medications, as well as medical therapies and lifelong exposure to medically applied radiation (medical radiation history) of the participant. Data on cancer therapies were validated by comparing questionnaire data with information on type and dose of medication as well as dose and number of radiotherapy fractions from therapy protocols of treating hospitals . All therapy data will be used to develop an individual exposure matrix for each participant. Furthermore, there were questions on family history of severe diseases. The complex information on family history of cancer was additionally requested in a personal interview in the clinic or through a telephone interview for all participants not attending the clinic in Mainz. The interview included information about cancer type and age at diagnosis within their relatives (children, siblings, nephews and nieces, parents, grandparents, aunts, uncles, and cousins).
Saliva Collection, Processing, and Storage
Saliva collection took place using the Oragene DNA Kit (DNA Genotek Inc, Ottawa, Ontario, Canada). The participant was asked not to drink, eat, smoke, or chew chewing gum 30 minutes before collection. Five minutes before the start, the participant rinsed his or her mouth and filled the saliva tube of the kit with saliva without air bubbles. The saliva was mixed with the DNA stabilizing fluid and immediately forwarded to the laboratory within the recruitment center. For persons participating near their residence, saliva samples were sent to the laboratory in Mainz in a provided cardboard box by standard mail. After receiving the collected samples, half of each saliva sample was lysed and incubated at 56 °C in the laboratory. After incubation, samples were mixed with ethanol, and the lysate was loaded in a NucleoSpin Blood L Column and centrifuged. After washing the silica membrane, the DNA was eluted with DNA buffer. The DNA sample was then stored at –80 °C. The remaining half of saliva from each participant was stored at –20 °C for later use.
Skin Biopsy Collection, Processing, and Storage
Skin samples were taken by punch biopsy under local anesthesia with a diameter of 3 mm at the cubital region for cancer patients and during surgery in the scar region for cancer-free controls. The resulting wounds were sewn with a single stitch. After successful extraction, biopsied skin was transferred to a vial with rich cell culture medium (Amniogrow, CytoGen GmbH, Wetzlar, Germany), stored at room temperature, and immediately taken to the laboratory or by courier service within 24 hours. Subcutaneous tissue was removed, and the biopsy was dissected in rich cell culture medium (Amniogrow, CytoGen GmbH, Wetzlar, Germany) and cultured in a humidified incubator at 37 °C with 5% CO2 (Heracell Vios 160i, Thermo Fisher Scientific, Waltham, MA) to allow the outgrowth and expansion of fibroblasts. Culture medium (Amniogrow, CytoGen GmbH, Wetzlar, Germany) was changed every 3-4 days. Passaging of fibroblasts was done using 0.05% trypsin with 0.1% ethylenediaminetetraacetate when reaching approximately 70% confluence. After the first passage, cells were cultured in low glucose Dulbecco’s minimal essential medium (Sigma-Aldrich, St. Louis, MO) containing 1% nonessential amino acids, 15% fetal bovine serum, and 1% penicillin/streptomycin (all supplements from Biochrom GmbH, Berlin Germany). Cultures were grown for 2-4 weeks to reach sufficient cell numbers for cryopreservation in liquid nitrogen or nitrogen gas.
All applicable institutional and governmental regulations concerning the ethical use of human volunteers were followed during this research. Approval by the Ethics Committee of the Medical Association of Rhineland-Palatinate was obtained (no. 837.262.12 (8363-F), no. 837.103.04 (4261), and no. 837.440.03 (4102)). Study participants who voluntarily gave consent for examinations, collection of samples, subsequent analysis, time-limited storage of personal data, and collected samples were included. Participants could consent to single components of the study while abstaining from others at any time. After confirmation to participate in the KiKme study, an appointment for the discussion of the informed consent was made. A date for skin biopsy, saliva sampling, and telephone or personal interview was obtained. Cases participating at the University Medical Center Mainz were offered the possibility of medical consultation. These consultations were not documented for this report. Participants were reimbursed and compensated for travel costs. To further increase participation despite potential long travel to Mainz, all cancer patients were also given the option to participate near their residence. If available, participants could name their attending dermatologist. Otherwise, the study team contacted a dermatologist near the residence of the participant. The attending dermatologists were asked to act as a cooperating partner, were trained for the study, and took the skin biopsy with the signed informed consent.
Potential cancer-free control participants were identified in the surgery schedules of the department for orthopedic surgery. They were contacted and informed about the content of the study during their stay in the hospital. Participation could be refused at any time during the procedure. To increase the study participation of cancer-free controls, the biopsy was taken from excess material during their surgical procedure.
From all participants, cultured human fibroblasts from 156 participants with the best matching results based on our criteria (52 triplets each with 1 SPN, 1 FPN, and 1 cancer-free control participant) will be selected for the radiation experiments (mean age of participants at sampling: SPN 33 years, range 20-51 years; FPN 33 years, range 21-49 years; controls 33 years, range 19-48 years; median age of participants at first neoplasm: SPN 8 years, range 0-14 years and FPN 8 years, range 1-14 years; mean calendar year of the first neoplasm: SPN 1991, range 1980-2011 and FPN 1991, range 1980-2009). During radiation experiments, cultured human fibroblasts from each of the 156 selected and carefully matched participants will be exposed to a low (eg, 0.05 Gy) as well as a high dose (2 Gy) of X-rays and will be sham-irradiated (0 Gy). The low dose of radiation will be applied to mimic an exposure scenario during medical diagnostics (eg, computed tomography), and the high dose represents an average single tumor dose applied to the target volume of conventional fractionated radiation therapy. The fibroblast of each triplet will be treated simultaneously to avoid batch effects within groups. In a preliminary analysis, we identified the time point after radiation with the highest amount of differentially expressed genes for our chosen radiation doses . The identified time point will be used to analyze differences in gene expression patterns between patient groups. The high number of samples from different participants in irradiation experiments (around one-third of the participants) allows us to distinguish possible gene expression patterns with candidate genes and underlying cellular pathways between groups and to identify differences between SPN cases and FPN controls as well as differences between former childhood cancer patients (SPNs and FPNs) and cancer-free controls. To be able to compare gene expression before and after exposure to ionizing radiation, RNA from 468 dishes with cultured human fibroblasts of the irradiation experiments (156 exposed to 0.05 Gy, 156 exposed to 2 Gy, and 156 sham-irradiated; 3 dishes for each participant) will be extracted and Illumina-sequenced. RNA sequencing data will be processed and cleaned as well as normalized using the Voom method [ ]. Gene expression of irradiated cells will be compared with the expression of sham-irradiated cells after the same time interval for each participant. Differentially expressed genes dependent on radiation dose will be detected using linear models and empirical Bayesian statistics. The differential gene expression after irradiation will be computed by comparing measurements of fibroblasts from each participant with measurements after sham-irradiation (eg, counts of transcripts in cells of each individual after 0 Gy versus counts after 2 Gy). P values will be computed for the interaction between the effect of radiation and group and for the effect of radiation alone using the R package limma (lmFit, eBayes, makeContrasts) with patient ID as a block variable and the factors patient group and radiation doses [ ]. The analyses will be performed without adjustment, with adjustment for age only, and with adjustment for age and gender. For the comparison between former childhood cancer patients with and without SPNs, the analyses will additionally be adjusted for age at first primary neoplasm diagnosis and for tumor subtype. Furthermore, sensitivity analyses will be performed separately for male participants and female participants with age adjustment. Differentially expressed genes will then be selected at a false discovery rate (FDR) level of 0.05 (Benjamini-Hochberg procedure). In addition, differentially expressed genes and their log2 fold change will be examined using Ingenuity Pathway Analysis (IPA; Version 1.13, QIAGEN Inc, 2018) with a right-tailed Fisher exact test examining pathway enrichment and z-score (≥|2|) indicating (in-) activation of pathways [ ]. In addition, IPA will be employed to predict upstream regulators as well as downstream diseases and functions. We will choose promising marker genes to validate the RNA sequencing experiments via real-time quantitative polymerase chain reaction. Thus, RNA sequencing data intend to identify differentially expressed candidate genes, which finally enables a weighted analysis of DNA single-nucleotide variants (SNVs) in these genes and related regions by selecting the smallest P value from all comparisons. To filter SNVs, a gene list will be created that contains all genes that were identified as differentially expressed in the messenger RNA and long noncoding RNA analyses after Bonferroni correction (with adjustment for age and gender as well as with adjustment for age at first tumor diagnosis and for tumor type). Furthermore, the list could be supplemented with genes from the associated pathways of the Ingenuity Pathway Database and known radiation-associated genes (RadAtlas) [ ] as well as genes associated with childhood cancer (International Cancer Genome Consortium [ICGC], Pediatric Cancer Genomic Data Portal [PeCan], PedcBio portal, Pediatric cancer gene database [Pedican], Xena browser) [ , ]. SNVs will be assigned to the genes if they are located in an area that includes the gene body, consisting of exons and introns, and 500 kilobases upstream and downstream of the gene body. In addition, SNVs will be assigned to the genes that were identified in the Genotype-Tissue Expression (GTEx) project [ ] as expression quantitative trait loci (eQTLs) for the gene [ ]. The analysis will be carried out using forest tests (RVTEST) [ , ] applying a single-variant Wald test at the SNV level. The burden test (combined multivariate and collapsing [CMC] method) [ ], sequence kernel association test (SKAT) [ ], and variable threshold method [ ] will be used for the gene-based examination of the DNA sequencing data at RVTEST. Association studies will be performed based on the generated gene list using FDR as correction for multiple testing with a significance level of 5% and genome wide without FDR adjustment. Simulation studies assuming our sample size and different SNV effect sizes (odds ratio [OR] 1.3, 1.5, 2, 3, and 4) for genome-wide association studies resulted in the significance level selection of 5% at the gene level and 0.005% at the SNV level. In addition, a weighted analysis of SNVs will be performed genome wide by using likelihood-based boosting [ ] and gene list P values as weights. Both tumor groups (former SPN and FPN patients) will be compared against the cancer-free controls, and, additionally, the tumor groups will be compared against each other. Results of the SNV analysis will be verified in a 2-stage procedure: First, identified genetic group differences in fibroblasts from about one-half of the participants (n=286) will be replicated in DNA sequenced from the saliva of the same participants. In the second stage, validated results will be replicated in the saliva DNA of an independent confirmation collective consisting of the remaining half of the participants (n=275). This 2-stage approach enables us to ameliorate problems of false discovery. Possible confounding or effect modification (eg, by sex, age at diagnosis of first or second primary neoplasm, type of first or second primary neoplasm, or batch effects) will be taken into account in this analysis. In addition, sensitivity analysis for other possible confounding factors like family history of cancer or received therapies will be conducted.
To identify possible risk associations with cancer treatment, participants were asked whether they had received cancer therapies. Used medications and affected body regions will be additionally inquired (n=556). For validation, self-reports will be compared with data from cancer therapies of the patients from hospitals and clinical studies . By measuring sensitivity and specificity, the quality of binary variables will be analyzed. Receiver operatic characteristic curves will be used for a graphical comparison. Positive and negative predictive values will be used to analyze the validity of the questionnaire. Cohen kappa will be used to measure the concordance between the information from questionnaires and from treating hospitals. Influencing factors (eg, number of neoplasms, sex, sociodemographic factors, comorbidities, time since cancer treatment) on the dichotomous outcome variable degree of agreement will be analyzed using logistic regression [ ]. If the questionnaire is reliable, conditional logistic regression and mixed models will be used to estimate possible risk associations with cancer therapies.
Differences in family history between childhood cancer patients with FPNs and SPNs as well as cancer-free controls could also be a confounder or effect modifier and will be investigated concerning family history of cancer, degree of family relatedness, age of diagnosis, and family history of chronic disease (n=556). Our interest here is to identify whether an increased number of cancer cases in families is associated with childhood cancer incidence. A family history of cancer was recorded as dichotomous variables for each degree of kinship, for maternal and paternal kinship, and for sex of family members in the questionnaires. The number of cases within families will be related to family size. Clustering of cancer within families will be estimated by the genealogical index of familiarity  and stratified by groups (SPN, FPN, cancer-free controls) to ascertain whether the average kinship among affected individuals in a pedigree differed from a randomly drawn control set of that pedigree. The kinship sum test [ ] will be applied to identify affected individuals exhibiting a closer relationship to other affected individuals than would be expected by chance. Conditional logistic regression will be applied to investigate the association between family history of cancer and the risk of primary childhood cancer (SPN and FPN). Analyses will be adjusted for sex and age at recruitment and stratified for kinship and sex. Cox proportional hazard models will be calculated adjusted for age, sex, family history of cancer, and primary childhood tumor entity to estimate standard incidence rates for SPNs among the cohort of childhood cancer patients. Further, conditional logistic regressions will be used to explore the associations between childhood cancer (SPN and FPN) and other diseases in the family (eg, diabetes, hypertension, elevated blood cholesterol).
The available biosamples of the study will further be used to forward research on other biological markers (eg, hyper- and hypovariability of gene expression, noncoding RNA, copy number variations, epigenetic changes like methylation pattern of genes, proteins associated with double-strand breaks, chromosomal aberrations) and to investigate their possible association with radiation-related cancer development in other KiKme research projects.
The recruitment started in 2013, and the result is shown in. Originally, we invited 247 SPNs and 1729 FPNs to participate in the study, of which 92 SPNs (92/247, 37.3%) and 399 FPNs (399/1729, 23.1%) were willing to participate. During the recruiting process, some participants refused their participation while others accepted. Thus, some rematching was needed. To gain complete matching groups in the radiation experiments, we allowed 17 FPN patients that developed an SPN later in life to migrate to the SPN group. However, taking the risk set sampling approach into account, their questionnaire data could be used both as an SPN case and as an FPN control in the questionnaire-based analyses (eg, on the risk of family history of cancer). Overall, 54.4% of the participants (47 SPN and 193 FPN of 441 total participants) participated in the study near their residence in a medical practice of 1 of the 182 cooperating dermatologists.
A total of 591 former childhood cancer patients and cancer-free controls aged 19 to 53 years (mean age 32 years, 51% women and 49% men) participated in the study (). The age distribution of participants with SPNs compared with FPNs was very similar (χ² test: P=.28), whereas participating cancer-free controls were slightly younger than participants with childhood cancer (χ² test: P<.001). Similar differences were found for nonparticipating childhood cancer survivors and nonparticipating cancer-free controls (χ² test nonparticipants with SPNs versus FPNs: P=.11; χ² test nonparticipating cancer-free controls versus nonparticipating childhood cancer survivors: P<.001). Further characteristics of participants and nonparticipants like age at diagnosis and tumor morphology are summarized in and .
|SPNsb (n=101)||FPNsc (n=340)||Controls (n=150)||Total (n=591)||SPNs (n=146)||FPNs (n=1389)||Controls (n=96)||Total (n=1631)|
|Female, n (%)||50 (49.5)||189 (55.6)||62 (41.3)||301 (50.9)||71 (48.6)||606 (43.6)||42 (43.8)||719 (44.1)|
|Male, n (%)||51 (50.5)||151 (44.4)||88 (58.7)||290 (49.1)||65 (44.5)||657 (47.3)||54 (56.2)||776 (47.6)|
|Sex missing, |
|N/Ad||N/A||N/A||N/A||10 (6.8)||126 (9.1)||0 (0)||136 (8.3)|
|Age at recruitment (years), mean (range)||32 (19-51)||34 (19-53)||29 (18-48)||32 (19-53)||34 (18-49)||34 (18-51)||31 (18-51)||33 (18-51)|
|<25 years old, |
|19 (18.8)||44 (12.9)||57 (38.0)||120 (20.3)||18 (12.3)||111 (8.0)||17 (17.7)||146 (9.0)|
|25-29 years old, n (%)||25 (24.8)||69 (20.3)||40 (26.7)||134 (22.7)||18 (12.3)||234 (16.8)||25 (26.0)||277 (17.0)|
|30-34 years old, n (%)||19 (18.8)||78 (22.9)||20 (13.2)||117 (19.8)||24 (16.4)||245 (17.6)||19 (29.8)||288 (17.7)|
|≥35 years old, |
|38 (37.6)||149 (43.8)||33 (22.0)||220 (37.2)||75 (51.4)||672 (48.4)||30 (31.3)||777 (47.6)|
|Age missing, |
|N/A||N/A||N/A||N/A||11 (7.5)||127 (9.1)||5 (5.2)||143 (8.8)|
|Age at 1st diagnosis (years), mean (range)||7 (0-14)||8 (0-16)||N/A||N/A||8 (0-14)||7 (0-15)||N/A||N/A|
|Year of 1st |
|Years between 1st and 2nd diagnoses, mean (range)||16 (2-35)||N/A||N/A||N/A||16 (1-30)||N/A||N/A||N/A|
|Age at 2nd diagnosis (years), mean (range)||23 (5-46)||N/A||N/A||N/A||24 (5-41)||N/A||N/A||N/A|
|Year of 2nd |
aInformation available only for nonparticipants from the main study.
bSPNs: second primary neoplasms.
cFPNs: first primary neoplasms.
dN/A: not applicable.
|Cancer site (International Classification of |
Childhood Cancer 3rd Edition)
|1st neoplasm, n (%)|
|Leukemia (I(a), I(b), I(c), I(d))||41 (40.6)||166 (48.8)||66 (45.2)||641 (46.1)|
|Lymphoma (II(a), II(b), II(c))||41 (40.6)||135 (39.7)||40 (27.4)||485 (34.9)|
|Central/peripheral nervous system (III(a), III(b), III(c), III(d), IV(a))||15 (14.9)||35 (10.3)||29 (19.9)||138 (9.9)|
|Other tumors V, VI(a), IX(a), IX(e)||4 (4.0)||4 (1.2)||0 (0.0)||0 (0.0)|
|2nd neoplasm, n (%)|
|Thyroid cancer (XI(b))||30 (29.7)||N/Ad||55 (37.7)||N/A|
|Skin carcinoma (XI(e))||32 (31.7)||N/A||53 (36.3)||N/A|
|Malignant melanoma (XI(d))||4 (4.0)||N/A||11 (7.5)||N/A|
|Leukemia (I(a), I(b), I(d))||9 (8.9)||N/A||16 (11.0)||N/A|
|Lymphoma (II(a), II(b))||6 (5.9)||N/A||N/A||N/A|
|Central nervous system (III(a), III(b), III(e))||9 (8.9)||N/A||N/A||N/A|
|Breast cancer (XI(f))||3 (3.0)||N/A||N/A||N/A|
|Other unspecific carcinoma (XI(f))||6 (5.9)||N/A||N/A||N/A|
|Sarcoma (IX(d), IX(e))||2 (2.0)||N/A||N/A||N/A|
|3rd neoplasm, n (%)|
|Renal carcinomas (VI(b))||1 (1.0)||N/A||—e||—|
|Skin carcinoma (XI(e))||2 (2.0)||N/A||—||—|
|Breast cancer (XI(f))||1 (1.0)||N/A||—||—|
|Other and unspecified carcinomas (XI(f))||2 (2.0)||N/A||—||—|
|Other specified intracranial and intraspinal neoplasms (III(e))||2 (2.0)||N/A||—||—|
|4th neoplasm, n (%)|
|Thyroid cancer (XI(b))||1 (1.0)||N/A||—||—|
|Cancer therapiesfor the 1st neoplasm, n (%)|
|Chemotherapy||93 (92.1)||312 (91.8)||—||—|
|Radiation therapy||74 (73.3)||225 (66.2)||—||—|
|Surgery||25 (24.8)||64 (18.8)||—||—|
|Cancer therapiesfor the2nd neoplasm, n (%)|
|Radiation therapy||21 (20.8)||N/A||—||—|
|Cancer therapiesfor the3rd neoplasm, n (%)|
|Cancer therapiesfor the4th neoplasm, n (%)|
aInformation available only for nonparticipants from the main study.
bSPNs: second primary neoplasms.
cFPNs: first primary neoplasms.
dN/A: not applicable.
eInformation on 3rd and 4th diagnoses were obtained only from participants; therefore, this information is not available for nonparticipants.
For 95% (87/91) of participating SPN cases, suitable FPN controls with a maximum difference of 3 calendar years between first diagnoses could be identified (). For the remaining 5%, the time difference was increased to 4-7 calendar years. The matching rate was comparable to the age at first diagnosis: 98% of SPN cases and FPN controls were diagnosed within 3 years of age, and 100% were diagnosed within 4 years of age. Matching for age at recruitment was accomplished within a 3-year age range for 93% (85/91) of participating SPN cases and FPN controls. The remaining 7% were matched by a maximum age range of 5 years. For 7 SPN cases (7/101, 6.9%), no suitable FPN cases participated in the study. However, their information from genetic analyses and questionnaires as well as the information from all other incomplete matching groups will also be included in the analyses.
Cancer-free controls (n=150) were recruited during their stay in the orthopedic surgery department and matched by age and sex to participating SPN cases and FPN controls. Participation proportion for cancer-free controls was originally 66.3% (163 participants of 246 directly contacted persons), but 6 cancer-free controls were excluded due to cancer diagnoses, 4 cancer-free controls actively withdrew from participation during the study period, 2 had to be excluded due to nonresponse, and 1 was excluded due to diabetes (). An additional cancer-free control took part in both the pilot study and the main study, and therefore, this participant was excluded from the pilot data.
The difference in age at recruitment for participating SPN cases and cancer-free controls was not larger than 3 years for 95% (76/81) of cancer-free controls and not more than 5 years for 98% (79/81;). Only 2 cancer-free controls (2/81, 2%) could not be matched within this age range. Included controls had a short hospital stay due to injuries or their consequences (87/150, 58.0%), joint diseases (17/150, 11.3%), osteopathy and chondropathy (14/150, 9.3%), diseases of the soft tissue (9/150, 6.0%), arthrosis (6/150, 4.0%), orthopedic after treatments (2/150, 1.3%), diseases of the skin and subcutaneous tissue (2/150, 1.3%), congenital malformations or deformities of the musculoskeletal system (1/150, 0.7%), diseases of the musculoskeletal system and connective tissue (1/150, 0.7%), or diseases of nerves, nerve roots, and nerve plexus (1/150, 0.7%). For 6.7% (10/150) of controls, no reason for the hospital stay was given.
Taking group changes from FPN to SPN into account, final participation proportions were 40.9% (101 participants out of 247 invited persons) for SPN cases, 19.7% (340 participants out of 1729 invited persons) for FPN controls, and 61.0% (150 participants out of 246 contacted persons) for cancer-free controls (). Mentioned reasons for refusal to participate were lack of interest or perceived lack of personal benefit (7 SPN, 49 FPN, 34 cancer-free controls), expenditure of time (36 SPN, 130 FPN, 14 cancer-free controls), illnesses (12 SPN, 20 FPN, 5 cancer-free controls), fear of skin biopsy (12 SPN, 50 FPN, 14 cancer-free controls), and unavailability due to insufficient language skills or problems of comprehension or incorrect contact information (1 SPN, 6 FPN, 5 cancer-free controls). All other participants (1235/1631, 75.7%) provided no reason for their refusal to participate.
In summary, this study successfully obtained questionnaire data for 85 SPN cases (84.2% of 101 participating SPN), 325 FPN controls (95.6% of 340 participating FPN), and 146 cancer-free controls (97.3% of 150 participating cancer-free controls). Skin biopsies were available from 92 SPN cases (91.1% of 101 participating SPN), 307 FPN controls (90.3% of 340 participating FPN), and 100 cancer-free controls (66.7% of 150 participating cancer-free controls). Overall, 3886 cryogenic tubes with primary skin fibroblasts were cryopreserved in liquid nitrogen for further experiments with a mean of 6.8 tubes per participant (SD 4.2, range: 0-28). In total, saliva samples were dispensed from 84 SPN cases (83.2% of 101 participating SPN) and 319 FPN controls (93.8% of 340 participating FPN), as well as from 108 cancer-free controls (72.0% of 150 participating cancer-free controls). Only 2 SPN cases, 3 FPN controls, and 13 cancer-free controls were unwilling to provide any biosamples for RNA and DNA analyses. Further, 2 FPN controls were excluded from the extraction of biosamples because of former hepatitis infections. Details on available survey modules and biosamples for participants are shown infor each donor group.
|Type of data||SPNsa (n=101)||FPNsb (n=340)||Controls (n=150)||Total (n=591)|
|Questionnaire data, n (%)|
|Participant information||85 (84.2)||325 (95.6)||144 (96.0)||554 (93.7)|
|Family history of diseases||85 (84.2)||325 (95.6)||146 (97.3)||556 (94.1)|
|Both questionnaires||85 (84.2)||325 (95.6)||144 (96.0)||554 (93.7)|
|Biosamples, n (%)|
|Biopsy||92 (91.1)||307 (90.3)||100 (66.7)||499 (84.4)|
|Saliva||84 (83.2)||319 (93.8)||108 (72.0)||511 (86.5)|
|Biopsy and saliva||77 (76.2)||291 (85.6)||71 (47.3)||439 (74.3)|
|Biopsy or saliva||99 (98.0)||335 (98.5)||137 (91.3)||571 (96.6)|
|No bio-samples||2 (2.0)||5 (1.5)||13 (8.7)||20 (3.4)|
|Cryopreserved tubes of fibroblasts|
|Tubes per participant, mean (SD)||7.7 (4.3)||6.5 (3.1)||6.9 (5.9)||6.8 (4.2)|
|Tubes per participant, minimum||0||0||0||0|
|Tubes per participant, maximum||20||16||28||28|
|DNA extracts, n (%)|
|From fibroblasts||90 (89.1)||301 (88.5)||97 (64.7)||488 (82.6)|
|From saliva||84 (83.2)||319 (93.8)||107 (71.3)||510 (86.3)|
aSPNs: second primary neoplasms.
bFPNs: first primary neoplasms.
Our molecular-epidemiological study is the first attempting to analyze observational data from questionnaires and molecular-biological factors associated with ionizing radiation in primary human fibroblasts of a unique childhood cancer survivor cohort. To study molecular-biological factors, we succeeded in obtaining fibroblasts derived from 499 skin biopsies and 511 saliva samples of former childhood cancer patients (SPNs and FPNs) and cancer-free controls. With this source, we can measure individual reactions to ionizing radiation in primary human skin fibroblasts. We will use these data for an informed analysis of potential genetic predispositions. Predispositions defined through DNA mutations can be identified using the DNA extracted from fibroblasts as well as saliva samples. Combining these results with observational data from questionnaires allows us to control for several confounding factors. During the recruitment process, we invited all former SPN and matched FPN patients from the German Childhood Cancer Registry who met our inclusion criteria. However, the number of eligible former childhood cancer patients was limited to 1990 even in such a large and long-running childhood cancer survivor cohort. While the participation of cancer-free controls was high (61%), the rate of participation among former childhood cancer patients was rather low (SPN 41%, FPN 20%). Different participation proportions can be explained by the nature of this study’s sampling strategy. Cancer-free controls were contacted in the hospital before undergoing surgery. Biopsies were then taken during that procedure without further effort for the patient. In contrast, SPN and FPN patients needed to travel or keep set appointments made for the biopsy. In general, the study involved complex logistics and high time expenditure for participants, especially for SPN and FPN participants. By implementing the possibility for former childhood cancer patients to participate near their residence, we reduced their effort and time spent on recruitment to a minimum. Our design required immense efforts in recruitment and data collection for the study centers. These efforts were worthwhile as they increased the rate of participation, even though an invasive procedure, such as skin biopsy, was demanded from more or less healthy individuals, and individual genetic analyses were performed. In summary, our study provides a new way of exploring the interplay between childhood cancer and second primary cancer predisposition and ionization radiation. We hope that this study will set a precedent and encourage others to perform similar projects on the international scale, requiring primary fibroblasts for experiments from large childhood cancer survivor cohorts and to investigate the underlying reasons for childhood cancer. This would help to improve therapeutic strategies, reduce the risk of developing a second primary cancer, and enhance the quality of the patients’ lives.
To identify molecular mechanisms potentially related to radiation and the development of childhood cancer, analyses at different levels are required to increase our knowledge. On the genomic level, single nucleotide polymorphisms (SNPs) can and should be analyzed in a population-based sample as it is common in genome-wide association studies (GWAS). Our sample size is limited by the number of available SPN cases and thus corresponds more to the size of a clinical cohort, which does not allow direct transfer of a GWAS approach. However, such clinical cohorts often consider gene expression and less frequently SNPs, which makes direct transmission difficult . Additionally, the investigation of radiation-induced effects will be carried out experimentally by gene expression measurement before and after irradiation. To investigate the connection between radiation and childhood cancer, statistical techniques from these 3 perspectives — GWAS, clinical cohorts, and experiments — must be combined. With this combination, an increase in statistical power can be achieved. However, sufficient statistical power will still be limited to strong associations.
Strengths and Limitations
In contrast to previously conducted studies that investigated the association between ionizing radiation and cancer risk [, - , - ], this epidemiological study is one of the first enabling the collection of detailed molecular-biological information before and after exposure of primary fibroblasts from a large number of participants exposed to diagnostic and therapeutic doses of ionizing radiation to investigate innate genetic radiation responses in the patients’ normal somatic cells [ , ]. We chose to perform experiments with primary fibroblasts, although lymphocytes used in other studies [ ] would have been easier to attain by venipuncture. However, their survival and prolonged cultivation without immortalization by Epstein-Barr virus transformation are very limited [ ]. Moreover, as some of our SPN and FPN donors have received bone marrow transplants, blood samples would have contained foreign blood cells of the bone marrow donors [ ], which makes it impossible to analyze germline mutations of included cases. By measuring individual reactions to different exposures of radiation in normal somatic cells of the same person, our design enables us to create several exposure scenarios for the same participant simultaneously and therefore to trick the problem of counterfactual thinking and to avoid some confounding and bias [ ]. The combination with observational data from questionnaires on medical radiation history, health, and family history of diseases allows comprehensive control for important confounders in the development of cancer. With additional collection of saliva samples from participants, DNA from an independent source is available for the validation and replication of results.
There are also several limitations to our study design. Given that we will analyze primary fibroblasts as monolayer cell cultures in vitro, this approach does not allow consideration of nontargeted radiation responses, such as the intercellular transmission of primarily adverse radiation effects to unirradiated neighboring cells via the so-called bystander effect, and their role in the development of therapy-related SPN . Thus, the complexity of the 3D interaction of the in vivo radiation response and its clinical manifestation cannot be adequately represented by experiments in our study with monolayers of a single cell type. In addition, gene expression and radiation response of the chosen primary fibroblasts might not be representative of cells of various target organs and all cancer subtypes. However, the experiments conducted in this study enable first and very important insights into the etiology of childhood cancer and SPN. Moreover, the biological endpoints of this study might be influenced by the exposure history of the fibroblasts to possible carcinogenic factors (eg, cancer therapy, alcohol, tobacco, medication). To deal with this problem, our questionnaires cover a broad spectrum of possible confounding factors and allow us to control for them. As with all epidemiological studies requiring biological material from patients, our study underlies an inherent survivor bias, as solely living patients could be recruited. Severe cases with high mortality (eg, acute myeloid leukemia after acute lymphoid leukemia or 2 diagnoses in rapid succession) cannot be captured to a full extent by this study. A selection bias cannot be ruled out in this study, as individuals, either without long-term health damages or with severe health problems, might be less motivated to participate. Moreover, a family history of cancer might influence the willingness to participate, and the statistical power might be limited by the sample size of available former childhood cancer cases. However, the invitations to this study included the maximum number of former childhood cancer patients registered in the German Childhood Cancer Registry that met the inclusion criteria. The recruitment of living patients several years after their diagnosis for the study further limited our analysis to particular patients that suffered from first and second malignancies with a good prognosis. The source population of hospital-based, cancer-free controls is regionally limited to the rural and urban areas around the University Medical Center in Mainz, while population-based cases were recruited all over Germany. However, we do not expect any major differences in the source populations since we expect that neither the interplay between hereditary dispositions and radiation nor cancer have any causal effect on hospitalization after an accident in the Mainz area. Thus, restricting the majority to these controls is equivalent to taking a simple random sample of the original population [ ]. In addition, it is known that participation decreases in populations with lower education as well as in very high-income groups. Even though there is no information on socioeconomic status for nonparticipants, we were able to compare the available information of the nonparticipants with the obtained information of the participants. The distribution of sex, age, and age at first diagnosis was similar among participants and nonparticipants and is representative for former childhood cancer patients with these diagnoses in Germany [ ].
To our knowledge, this is the first molecular-epidemiological study on radiation, childhood cancer, and second primary cancer providing a large number of primary fibroblasts from skin biopsies of well-characterized and carefully matched participants for irradiation experiments. In this study, we were able to successfully recruit 441 former SPN and FPN patients from the large survivor cohort of the German Childhood Cancer Registry long after their diagnosis and 150 cancer-free control patients from the Department of Orthopedics and Traumatology of the University Medical Center Mainz. In future projects, the combination of experimental and observational data with a unique study sample, including primary normal somatic cells from former childhood cancer patients and cancer-free controls, will forward research on radiation-related risk factors for childhood cancer, SPNs, and its underlying genetics. Using the gained knowledge from irradiation experiments and analyses on different molecular levels (eg, DNA, RNA, epigenetics), we aim to overcome challenges of personalized childhood cancer therapies and gain insight into the detrimental cellular responses and potential mechanisms of low medically applied radiation doses.
The authors especially thank Claudia Spix from the German Childhood Cancer Registry for her assistance in developing strategies and materials for the recruitment of former childhood cancer patients with her long-standing experience in conducting register-based studies in Germany. In addition, we gratefully acknowledge the assistance from Franziska Himmelsbach, Cornelia Becker, Ilona Kerenyi, and Marianne Brömmel from the German Childhood Cancer Registry who identified, matched, and made the first contact with former childhood cancer patients. We are thankful for the local support of all participating dermatologists in Germany, Austria, and Switzerland, for the central support of Patricia Sadre Fischer during the start of the recruitment, as well as for the excellent laboratory assistance of Ursula Disque-Kaiser. We further thank Caine Lucas Grandt, Claas Sontag, Katharina Musiolik, and Christin Goldbaum for their meticulous work on the databases and Heiko Karle for his tireless work to establish the method for fibroblast irradiation. The authors acknowledge resources and support from the Bioinformatics Core Facility at the University Medical Center Mainz.
This work was supported by the Federal Ministry of Education and Research in Germany (Grants 02NUK016A, 02NUK042A, 02NUK042B, 02NUK042C, and 02NUK042D). The study is funded among other research projects as part of the ISIMEP (Intrinsic radiation sensitivity: Identification, mechanisms and epidemiology, principal investigator: MB) and the ISIBELA (Intrinsic radiation sensitivity: Identification of biological and epidemiological long-term effects, principal investigator: MB and HS) consortium. The publication of this article was funded by the Open Access Fund of the Leibniz Association.
MM is a principal investigator of the KiKme study and developed its design, which was implemented and monitored by MM and LKB. PK supported the development of strategies for the recruitment of former childhood cancer patients. MM, LKB, IS, and DG conducted the recruitment of the participants, which was organized and planned by MM, LKB, and IS. MM, LKB, HS, and PD monitored the recruitment of controls. DG, SZ, and HS established the method of fibroblast sampling. CG, PD, and JH were responsible for biopsy sampling. They were trained and supervised by MM and HS. In the study, HSZ takes care of the project´s biobank and controls for the quality of all biosamples. IS conducts the work in the laboratory, including the processing of saliva samples and skin biopsies. LKB and SZ were responsible for the pseudonymization of all biosamples. MM, HB, MH, and AP developed the analyses pipelines for the project. Analysis data of biosamples are processed by AP and TH. LKB and WHB are responsible for data management. HSZ, SZ, DG, IS, JM, PSK, PK, AP, HB, TH, MB, and HS contributed to the writing process, which was initially prepared by MM and LKB. All authors revised the manuscript and agreed to be accountable for all aspects of the work.
Conflicts of Interest
Number of matching groups and time spans for matching between patient groups of participants.DOCX File , 19 KB
- Thun M, Linet MS, Cerhan JR, Haiman CA, Schottenfeld D. Cancer Epidemiology and Prevention, 4th edition. Oxford, England: Oxford University Press; 2017.
- Steliarova-Foucher E, Colombet M, Ries LAG, Moreno F, Dolya A, Bray F, IICC-3 contributors. International incidence of childhood cancer, 2001-10: a population-based registry study. Lancet Oncol 2017 Jun;18(6):719-731 [FREE Full text] [CrossRef] [Medline]
- Spector LG, Pankratz N, Marcotte EL. Genetic and nongenetic risk factors for childhood cancer. Pediatr Clin North Am 2015 Feb;62(1):11-25 [FREE Full text] [CrossRef] [Medline]
- Matsuse M, Takahashi M, Mitsutake N, Nishihara E, Hirokawa M, Kawaguchi T, et al. The FOXE1 and NKX2-1 loci are associated with susceptibility to papillary thyroid carcinoma in the Japanese population. J Med Genet 2011 Sep;48(9):645-648. [CrossRef] [Medline]
- Johansson G, Andersson U, Melin B. Recent developments in brain tumor predisposing syndromes. Acta Oncol 2016;55(4):401-411. [CrossRef] [Medline]
- Giacomazzi CR, Giacomazzi J, Netto CBO, Santos-Silva P, Selistre SG, Maia AL, et al. Pediatric cancer and Li-Fraumeni/Li-Fraumeni-like syndromes: a review for the pediatrician. Rev Assoc Med Bras (1992) 2015;61(3):282-289 [FREE Full text] [CrossRef] [Medline]
- Saletta F, Dalla Pozza L, Byrne JA. Genetic causes of cancer predisposition in children and adolescents. Transl Pediatr 2015 Apr;4(2):67-75 [FREE Full text] [CrossRef] [Medline]
- Zhang J, Walsh MF, Wu G, Edmonson MN, Gruber TA, Easton J, et al. Germline mutations in predisposition genes in pediatric cancer. N Engl J Med 2015 Dec 10;373(24):2336-2346 [FREE Full text] [CrossRef] [Medline]
- Mateos MK, Barbaric D, Byatt S, Sutton R, Marshall GM. Down syndrome and leukemia: insights into leukemogenesis and translational targets. Transl Pediatr 2015 Apr;4(2):76-92 [FREE Full text] [CrossRef] [Medline]
- Takeuchi S, Koike M, Park S, Seriu T, Bartram CR, Taub HE, et al. The ATM gene and susceptibility to childhood T-cell acute lymphoblastic leukaemia. Br J Haematol 1998 Nov;103(2):536-538. [CrossRef] [Medline]
- Mansur MB, van Delft FW, Colman SM, Furness CL, Gibson J, Emerenciano M, et al. Distinctive genotypes in infants with T-cell acute lymphoblastic leukaemia. Br J Haematol 2015 Nov;171(4):574-584 [FREE Full text] [CrossRef] [Medline]
- Cavé H, Caye A, Strullu M, Aladjidi N, Vignal C, Ferster A, et al. Acute lymphoblastic leukemia in the context of RASopathies. Eur J Med Genet 2016 Mar;59(3):173-178. [CrossRef] [Medline]
- Kratz CP, Franke L, Peters H, Kohlschmidt N, Kazmierczak B, Finckh U, et al. Cancer spectrum and frequency among children with Noonan, Costello, and cardio-facio-cutaneous syndromes. Br J Cancer 2015 Apr 14;112(8):1392-1397 [FREE Full text] [CrossRef] [Medline]
- Arber DA, Orazi A, Hasserjian R, Thiele J, Borowitz MJ, Le Beau MM, et al. The 2016 revision to the World Health Organization classification of myeloid neoplasms and acute leukemia. Blood 2016 May 19;127(20):2391-2405 [FREE Full text] [CrossRef] [Medline]
- Czuchlewski DR, Peterson LC. Myeloid neoplasms with germline predisposition: A new provisional entity within the World Health Organization Classification. Surg Pathol Clin 2016 Mar;9(1):165-176. [CrossRef] [Medline]
- Lakshmi Narendra B, Eshvendar Reddy K, Shantikumar S, Ramakrishna S. Immune system: a double-edged sword in cancer. Inflamm Res 2013 Sep 19;62(9):823-834. [CrossRef] [Medline]
- Ward G. The infective theory of acute leukaemia. British Journal of Childhood Diseases 1917:1.
- Greaves M. Infection, immune responses and the aetiology of childhood leukaemia. Nat Rev Cancer 2006 Mar 9;6(3):193-203. [CrossRef] [Medline]
- Adami HO, Hunter D, Trichopoulos D. Textbook of Cancer Epidemiology, 2nd edition. Oxford, England: Oxford University Press; 2008.
- Villumsen M, Sørup S, Jess T, Ravn H, Relander T, Baker JL, et al. Risk of lymphoma and leukaemia after bacille Calmette-Guérin and smallpox vaccination: a Danish case-cohort study. Vaccine 2009 Nov 16;27(49):6950-6958. [CrossRef] [Medline]
- Caputo M, Raupach-Rosin H, Karch A, Borte M, Lehmann I, Liebert UG, et al. Vaccinations and infections are associated with unrelated antibody titers: An analysis from the German Birth Cohort Study LISA. Front Pediatr 2019 Jun 25;7:254 [FREE Full text] [CrossRef] [Medline]
- Marcotte EL, Thomopoulos TP, Infante-Rivard C, Clavel J, Petridou ET, Schüz J, et al. Caesarean delivery and risk of childhood leukaemia: a pooled analysis from the Childhood Leukemia International Consortium (CLIC). Lancet Haematol 2016 Apr;3(4):e176-e185 [FREE Full text] [CrossRef] [Medline]
- Rudant J, Orsi L, Menegaux F, Petit A, Baruchel A, Bertrand Y, et al. Childhood acute leukemia, early common infections, and allergy: The ESCALE Study. Am J Epidemiol 2010 Nov 01;172(9):1015-1027. [CrossRef] [Medline]
- Rudant J, Lightfoot T, Urayama KY, Petridou E, Dockerty JD, Magnani C, et al. Childhood acute lymphoblastic leukemia and indicators of early immune stimulation: a Childhood Leukemia International Consortium study. Am J Epidemiol 2015 Apr 15;181(8):549-562 [FREE Full text] [CrossRef] [Medline]
- Urayama KY, Buffler PA, Gallagher ER, Ayoob JM, Ma X. A meta-analysis of the association between day-care attendance and childhood acute lymphoblastic leukaemia. Int J Epidemiol 2010 Jun;39(3):718-732 [FREE Full text] [CrossRef] [Medline]
- UK Childhood Cancer Study Investigators. Breastfeeding and childhood cancer. Br J Cancer 2001 Nov 30;85(11):1685-1694 [FREE Full text] [CrossRef] [Medline]
- Maia RDRP, Wunsch Filho V. Infection and childhood leukemia: review of evidence. Rev. Saude Publica 2013 Dec;47(6):1172-1185. [CrossRef]
- Morra ME, Kien ND, Elmaraezy A, Abdelaziz OAM, Elsayed AL, Halhouli O, et al. Early vaccination protects against childhood leukemia: A systematic review and meta-analysis. Sci Rep 2017 Nov 22;7(1):15986 [FREE Full text] [CrossRef] [Medline]
- Schottenfeld DL, Beebe-Dimmer J. Multiple Primary Cancers. In: Schottenfeld D, Fraumeni JF, editors. Cancer Epidemiology and Prevention. Oxford, England: Oxford University Press; 2009.
- Ross J, Spector L. Cancers in Children. In: Schoettenfeld D, Fraumeni JF, editors. Cancer Epidemiology and Prevention. Oxford, England: Oxford University Press; 2006:1251-1268.
- Nikiforova MN, Stringer JR, Blough R, Medvedovic M, Fagin JA, Nikiforov YE. Proximity of chromosomal loci that participate in radiation-induced rearrangements in human cells. Science 2000 Oct 6;290(5489):138-141. [CrossRef] [Medline]
- Kaatsch PG, Spix C. German Childhood Cancer Registry - Annual Report 2016 (1980-2015). Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI) at the University Medical Center of the Johannes Gutenberg University, Mainz. 2016. URL: https://www.unimedizin-mainz.de/fileadmin/kliniken/dkkr/pdf/jb/jb2016/jb2016_s.pdf [accessed 2021-09-24]
- Ron E, Modan B, Boice JD, Alfandary E, Stovall M, Chetrit A, et al. Tumors of the brain and nervous system after radiotherapy in childhood. N Engl J Med 1988 Oct 20;319(16):1033-1039. [CrossRef] [Medline]
- Albert R, Shore R, Harley N, Omran A. Follow-up Studies of Patients Treated by X-Ray Epilation for Tinea Capitis. In: Burns FJ, Upton AC, Silini G, editors. Radiation Carcinogenesis and DNA Alterations. Boston, MA: Springer; 1986:1-25.
- Tucker MA, Jones PH, Boice JD, Robison LL, Stone BJ, Stovall M, et al. Therapeutic radiation at a young age is linked to secondary thyroid cancer. The Late Effects Study Group. Cancer Res 1991 Jun 01;51(11):2885-2888 [FREE Full text] [Medline]
- Travis LB, Ng AK, Allan JM, Pui C, Kennedy AR, Xu XG, et al. Second malignant neoplasms and cardiovascular disease following radiotherapy. J Natl Cancer Inst 2012 Mar 07;104(5):357-370 [FREE Full text] [CrossRef] [Medline]
- Boice JD. Cancer following irradiation in childhood and adolescence. Med Pediatr Oncol Suppl 1996;1:29-34. [Medline]
- Hennewig U, Kaatsch P, Blettner M, Spix C. Local radiation dose and solid second malignant neoplasms after childhood cancer in Germany: a nested case-control study. Radiat Environ Biophys 2014 Aug 27;53(3):485-493. [CrossRef] [Medline]
- Tukenova M, Guibout C, Hawkins M, Quiniou E, Mousannif A, Pacquement H, et al. Radiation therapy and late mortality from second sarcoma, carcinoma, and hematological malignancies after a solid cancer in childhood. Int J Radiat Oncol Biol Phys 2011 Jun 01;80(2):339-346. [CrossRef] [Medline]
- Thun M, Linet M, Cerhan J, Haiman C, Schottenfeld D. Cancer Epidemiology and Prevention. In: 2017 (4). Oxford, England: Oxford University Press; 2017.
- IARC Monographs on the Evaluation of Carcinogenic Risks to Humans Volume 100D. World Health Organization International Agency for Research on Cancer. 2012. URL: https://publications.iarc.fr/Book-And-Report-Series/Iarc-Monographs-On-The-Identification-Of-Carcinogenic-Hazards-To-Humans/Radiation-2012 [accessed 2021-09-24]
- Takahashi M, Saenko VA, Rogounovitch TI, Kawaguchi T, Drozd VM, Takigawa-Imamura H, et al. The FOXE1 locus is a major genetic determinant for radiation-related thyroid carcinoma in Chernobyl. Hum Mol Genet 2010 Jun 15;19(12):2516-2523. [CrossRef] [Medline]
- Sherborne AL, Lavergne V, Yu K, Lee L, Davidson PR, Mazor T, et al. Somatic and germline TP53 alterations in second malignant neoplasms from pediatric cancer survivors. Clin Cancer Res 2017 Apr 01;23(7):1852-1861 [FREE Full text] [CrossRef] [Medline]
- Morton LM, Sampson JN, Armstrong GT, Chen T, Hudson MM, Karlins E, et al. Genome-wide association study to identify susceptibility loci that modify radiation-related risk for breast cancer after childhood cancer. J Natl Cancer Inst 2017 Nov 01;109(11):1 [FREE Full text] [CrossRef] [Medline]
- Hodgson D, van Leeuwen F, Ng A, Morton L, Henderson TO. Breast cancer after childhood, adolescent, and young adult cancer: it's not just about chest radiation. Am Soc Clin Oncol Educ Book 2017;37:736-745 [FREE Full text] [CrossRef] [Medline]
- Meadows AT, Strong LC, Li FP, D'Angio GJ, Schweisguth O, Freeman AI, et al. Bone sarcoma as a second malignant neoplasm in children: influence of radiation and genetic predisposition for the Late Effects Study Group. Cancer 1980 Dec 15;46(12):2603-2606. [CrossRef] [Medline]
- Lin EC. Radiation risk from medical imaging. Mayo Clin Proc 2010 Dec;85(12):1142-6; quiz 1146 [FREE Full text] [CrossRef] [Medline]
- Diallo I, Haddy N, Adjadj E, Samand A, Quiniou E, Chavaudra J, et al. Frequency distribution of second solid cancer locations in relation to the irradiated volume among 115 patients treated for childhood cancer. Int J Radiat Oncol Biol Phys 2009 Jul 01;74(3):876-883. [CrossRef] [Medline]
- Bithell JF, Stiller CA. A new calculation of the carcinogenic risk of obstetric X-raying. Stat Med 1988 Aug;7(8):857-864. [CrossRef] [Medline]
- Boice JD, Miller RW. Childhood and adult cancer after intrauterine exposure to ionizing radiation. Teratology 1999 Apr;59(4):227-233. [CrossRef] [Medline]
- Giles D, Hewitt D, Stewart A, Webb J. Malignant disease in childhood and diagnostic irradiation in utero. Lancet 1956 Sep 01;271(6940):447. [CrossRef] [Medline]
- Graham S, Levin ML, Lilienfeld AM, Schuman LM, Gibson R, Dowd JE, et al. Preconception, intrauterine, and postnatal irradiation as related to leukemia. Natl Cancer Inst Monogr 1966 Jan;19:347-371. [Medline]
- Linet MS, Slovis TL, Miller DL, Kleinerman R, Lee C, Rajaraman P, et al. Cancer risks associated with external radiation from diagnostic imaging procedures. CA Cancer J Clin 2012;62(2):75-100 [FREE Full text] [CrossRef] [Medline]
- MacMahon B. Prenatal x-ray exposure and childhood cancer. J Natl Cancer Inst 1962 May;28:1173-1191. [Medline]
- Stewart A, Webb J. A survey of childhood malignancies. Br Med J 1958 Jun 28;1(5086):1495-1508 [FREE Full text] [CrossRef] [Medline]
- Wakeford R. Childhood leukaemia following medical diagnostic exposure to ionizing radiation in utero or after birth. Radiat Prot Dosimetry 2008;132(2):166-174. [CrossRef] [Medline]
- Austin LM, Frush DP. Compendium of national guidelines for imaging the pregnant patient. AJR Am J Roentgenol 2011 Oct;197(4):W737-W746. [CrossRef] [Medline]
- Rajaraman P, Simpson J, Neta G, Berrington de Gonzalez A, Ansell P, Linet MS, et al. Early life exposure to diagnostic radiation and ultrasound scans and risk of childhood cancer: case-control study. BMJ 2011 Feb 10;342:d472 [FREE Full text] [CrossRef] [Medline]
- Baaken D, Hammer GP, Seidenbusch MC, Schneider K, Spix C, Blettner M, et al. Second follow-up of a German cohort on childhood cancer incidence after exposure to postnatal diagnostic x-ray. J Radiol Prot 2019 Jul 25;39(4):1074-1091. [CrossRef] [Medline]
- Pernot E, Hall J, Baatout S, Benotmane MA, Blanchardon E, Bouffler S, et al. Ionizing radiation biomarkers for potential use in epidemiological studies. Mutat Res 2012;751(2):258-286 [FREE Full text] [CrossRef] [Medline]
- Hall J, Jeggo PA, West C, Gomolka M, Quintens R, Badie C, et al. Ionizing radiation biomarkers in epidemiological studies - An update. Mutat Res Rev Mutat Res 2017;771:59-84. [CrossRef] [Medline]
- Krille L, Dreger S, Schindel R, Albrecht T, Asmussen M, Barkhausen J, et al. Risk of cancer incidence before the age of 15 years after exposure to ionising radiation from computed tomography: results from a German cohort study. Radiat Environ Biophys 2015 Mar 8;54(1):1-12. [CrossRef] [Medline]
- Krille L, Jahnen A, Mildenberger P, Schneider K, Weisser G, Zeeb H, et al. Computed tomography in children: multicenter cohort study design for the evaluation of cancer risk. Eur J Epidemiol 2011 Mar 12;26(3):249-250. [CrossRef] [Medline]
- Krille L, Zeeb H, Jahnen A, Mildenberger P, Seidenbusch M, Schneider K, et al. Computed tomographies and cancer risk in children: a literature overview of CT practices, risk estimations and an epidemiologic cohort study proposal. Radiat Environ Biophys 2012 May 5;51(2):103-111. [CrossRef] [Medline]
- Spycher BD, Lupatsch JE, Zwahlen M, Röösli M, Niggli F, Grotzer MA, Swiss Pediatric Oncology Group, Swiss National Cohort Study Group. Background ionizing radiation and the risk of childhood cancer: a census-based nationwide cohort study. Environ Health Perspect 2015 Jun;123(6):622-628 [FREE Full text] [CrossRef] [Medline]
- Hammer GP, Seidenbusch MC, Regulla DF, Spix C, Zeeb H, Schneider K, et al. Childhood cancer risk from conventional radiographic examinations for selected referral criteria: Results from a large cohort study. American Journal of Roentgenology 2011 Jul;197(1):217-223. [CrossRef]
- Spix C, Schmiedel S, Kaatsch P, Schulze-Rath R, Blettner M. Case-control study on childhood cancer in the vicinity of nuclear power plants in Germany 1980-2003. Eur J Cancer 2008 Jan;44(2):275-284. [CrossRef] [Medline]
- Zeeb H, Blettner M, Hammer GP, Langner I. Cohort mortality study of German cockpit crew, 1960-1997. Epidemiology 2002 Nov;13(6):693-699. [CrossRef] [Medline]
- Spix C, Grosche B, Bleher M, Kaatsch P, Scholz-Kreisel P, Blettner M. Background gamma radiation and childhood cancer in Germany: an ecological study. Radiat Environ Biophys 2017 May;56(2):127-138. [CrossRef] [Medline]
- Rothman KJ, Greenland S. Modern Epidemiology. Philadelphia, PA: Lippincott Williams & Wilkins; 2009.
- Kaatsch P, Grabow D, Spix C. German Childhood Cancer Registry - Annual Report 2017 (1980-2016). Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI) at the University Medical Center of the Johannes Gutenberg, University Mainz. 2018. URL: https://www.unimedizin-mainz.de/fileadmin/kliniken/dkkr/pdf/jb/jb2017/jb2017_s.pdf [accessed 2021-09-24]
- Debling D, Spix C, Blettner M, Michaelis J, Kaatsch P. The cohort of long-term survivors at the German childhood cancer registry. Klin Padiatr 2008;220(6):371-377. [CrossRef] [Medline]
- Steliarova-Foucher E, Stiller C, Lacour B, Kaatsch P. International Classification of Childhood Cancer, third edition. Cancer 2005 Apr 01;103(7):1457-1467 [FREE Full text] [CrossRef] [Medline]
- Westreich D. Berkson's bias, selection bias, and missing data. Epidemiology 2012 Jan;23(1):159-164 [FREE Full text] [CrossRef] [Medline]
- Brackmann L, Grandt C, Schwarz H, Schmidtmann I, Hankeln T, Galetzka D, et al. Exposure assessment among an adult population on radiation therapy, chemotherapy, and other cancer therapies in childhood. In: Cancer Research. 2020 Presented at: AACR Special Conference on the Advances in Pediatric Cancer Research; September 17-20, 2019; Montreal, QC, Canada. [CrossRef]
- Brackmann LK, Poplawski A, Grandt CL, Schwarz H, Hankeln T, Rapp S, et al. Comparison of time and dose dependent gene expression and affected pathways in primary human fibroblasts after exposure to ionizing radiation. Mol Med 2020 Sep 09;26(1):85 [FREE Full text] [CrossRef] [Medline]
- Law CW, Chen Y, Shi W, Smyth GK. voom: Precision weights unlock linear model analysis tools for RNA-seq read counts. Genome Biol 2014 Feb 03;15(2):R29 [FREE Full text] [CrossRef] [Medline]
- Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, et al. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res 2015 Apr 20;43(7):e47 [FREE Full text] [CrossRef] [Medline]
- Krämer A, Green J, Pollard J, Tugendreich S. Causal analysis approaches in Ingenuity Pathway Analysis. Bioinformatics 2014 Feb 15;30(4):523-530 [FREE Full text] [CrossRef] [Medline]
- Xu H, Liu Y, Li Y, Diao L, Xun Z, Zhang Y, et al. RadAtlas 1.0: a knowledgebase focusing on radiation-associated genes. Int J Radiat Biol 2020 Aug;96(8):980-987. [CrossRef] [Medline]
- Zhang J, Baran J, Cros A, Guberman JM, Haider S, Hsu J, et al. International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics data. Database (Oxford) 2011;2011:bar026 [FREE Full text] [CrossRef] [Medline]
- Jeanquartier F, Jean-Quartier C, Holzinger A. Use case driven evaluation of open databases for pediatric cancer research. BioData Min 2019;12:2 [FREE Full text] [CrossRef] [Medline]
- GTEx Consortium. Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans. Science 2015 May 08;348(6235):648-660 [FREE Full text] [CrossRef] [Medline]
- Li X, Kim Y, Tsang EK, Davis JR, Damani FN, Chiang C, GTEx Consortium, Laboratory‚ Data Analysis Center (LDACC)—Analysis Working Group, Statistical Methods groups—Analysis Working Group, Enhancing GTEx (eGTEx) groups, NIH/NCI, NIH/NHGRI, NIH/NIMH, NIH/NIDA, Biospecimen Collection Source Site—NDRI, Biospecimen Collection Source Site—RPCI, Biospecimen Core Resource—VARI, Brain Bank Repository—University of Miami Brain Endowment Bank, Leidos Biomedical—Project Management, ELSI Study, Genome Browser Data Integration —EBI, Genome Browser Data Integration —UCSC Genomics Institute‚ University of California Santa Cruz, et al. The impact of rare variation on gene expression across tissues. Nature 2017 Oct 11;550(7675):239-243 [FREE Full text] [CrossRef] [Medline]
- Tutz G, Binder H. Generalized additive modeling with implicit variable selection by likelihood-based boosting. Biometrics 2006 Dec;62(4):961-971. [CrossRef] [Medline]
- Zhan X, Hu Y, Li B, Abecasis GR, Liu DJ. RVTESTS: an efficient and comprehensive tool for rare variant association analysis using sequence data. Bioinformatics 2016 May 01;32(9):1423-1426 [FREE Full text] [CrossRef] [Medline]
- Li B, Leal SM. Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data. Am J Hum Genet 2008 Sep;83(3):311-321 [FREE Full text] [CrossRef] [Medline]
- Wu MC, Lee S, Cai T, Li Y, Boehnke M, Lin X. Rare-variant association testing for sequencing data with the sequence kernel association test. Am J Hum Genet 2011 Jul 15;89(1):82-93 [FREE Full text] [CrossRef] [Medline]
- Price AL, Kryukov GV, de Bakker PI, Purcell SM, Staples J, Wei L, et al. Pooled association tests for rare variants in exon-resequencing studies. The American Journal of Human Genetics 2010 Jun;86(6):982. [CrossRef]
- Hill J. A survey of cancer sites by kinship in the Utah Mormon population. Cancer Incidence in Defined Populations: Banbury Report 1980;4:299.
- Rainer J, Taliun D, D'Elia Y, Pattaro C, Domingues FS, Weichenberger CX. FamAgg: an R package to evaluate familial aggregation of traits in large pedigrees. Bioinformatics 2016 May 15;32(10):1583-1585 [FREE Full text] [CrossRef] [Medline]
- Binder H, Benner A, Bullinger L, Schumacher M. Tailoring sparse multivariable regression techniques for prognostic single-nucleotide polymorphism signatures. Stat Med 2013 May 10;32(10):1778-1791. [CrossRef] [Medline]
- Pokora R, Krille L, Dreger S, Lee C, Günster C, Zeeb H, et al. Computed Tomography in Germany. Dtsch Arztebl Int 2016 Oct 28;113(43):721-728 [FREE Full text] [CrossRef] [Medline]
- Pierce DA, Shimizu Y, Preston DL, Vaeth M, Mabuchi K. Studies of the mortality of atomic bomb survivors. Report 12, Part I. Cancer: 1950-1990. Radiat Res 1996 Jul;146(1):1-27. [Medline]
- Cardis E, Gilbert ES, Carpenter L, Howe G, Kato I, Armstrong BK, et al. Effects of low doses and low dose rates of external ionizing radiation: cancer mortality among nuclear industry workers in three countries. Radiat Res 1995 May;142(2):117-132. [Medline]
- Preston DL, Kusumi S, Tomonaga M, Izumi S, Ron E, Kuramoto A, et al. Cancer incidence in atomic bomb survivors. Part III. Leukemia, lymphoma and multiple myeloma, 1950-1987. Radiat Res 1994 Feb;137(2 Suppl):S68-S97. [Medline]
- Thompson DE, Mabuchi K, Ron E, Soda M, Tokunaga M, Ochikubo S, et al. Cancer incidence in atomic bomb survivors. Part II: Solid tumors, 1958-1987. Radiat Res 1994 Feb;137(2 Suppl):S17-S67. [Medline]
- Boice JD, Blettner M, Kleinerman RA, Stovall M, Moloney WC, Engholm G, et al. Radiation dose and leukemia risk in patients treated for cancer of the cervix. J Natl Cancer Inst 1987 Dec;79(6):1295-1311. [Medline]
- Boice JD, Engholm G, Kleinerman RA, Blettner M, Stovall M, Lisco H, et al. Radiation dose and second cancer risk in patients treated for cancer of the cervix. Radiat Res 1988 Oct;116(1):3-55. [Medline]
- Boice JD, Preston D, Davis FG, Monson RR. Frequent chest X-ray fluoroscopy and breast cancer incidence among tuberculosis patients in Massachusetts. Radiat Res 1991 Feb;125(2):214-222. [Medline]
- Tucker MA, D'Angio GJ, Boice JD, Strong LC, Li FP, Stovall M, et al. Bone sarcomas linked to radiotherapy and chemotherapy in children. N Engl J Med 1987 Sep 03;317(10):588-593. [CrossRef] [Medline]
- Hawkins MM, Wilson LM, Burton HS, Potok MH, Winter DL, Marsden HB, et al. Radiotherapy, alkylating agents, and risk of bone cancer after childhood cancer. J Natl Cancer Inst 1996 Mar 06;88(5):270-278. [CrossRef] [Medline]
- Wong FL, Boice JD, Abramson DH, Tarone RE, Kleinerman RA, Stovall M, et al. Cancer incidence after retinoblastoma. Radiation dose and sarcoma risk. JAMA 1997 Oct 15;278(15):1262-1267. [CrossRef] [Medline]
- de Vathaire F, Hardiman C, Shamsaldin A, Campbell S, Grimaud E, Hawkins M, et al. Thyroid carcinomas after irradiation for a first cancer during childhood. Arch Intern Med 1999;159(22):2713-2719. [CrossRef] [Medline]
- Juerß D, Zwar M, Giesen U, Nolte R, Kriesen S, Baiocco G, et al. Comparative study of the effects of different radiation qualities on normal human breast cells. Radiat Oncol 2017 Sep 25;12(1):159 [FREE Full text] [CrossRef] [Medline]
- Yang XR, Killian JK, Hammond S, Burke LS, Bennett H, Wang Y, et al. Characterization of genomic alterations in radiation-associated breast cancer among childhood cancer survivors, using comparative genomic hybridization (CGH) arrays. PLoS One 2015;10(3):e0116078 [FREE Full text] [CrossRef] [Medline]
- Haddy N, Tartier L, Koscielny S, Adjadj E, Rubino C, Brugières L, et al. Repair of ionizing radiation-induced DNA damage and risk of second cancer in childhood cancer survivors. Carcinogenesis 2014 Aug;35(8):1745-1749. [CrossRef] [Medline]
- Neitzel H. A routine method for the establishment of permanent growing lymphoblastoid cell lines. Hum Genet 1986 Aug;73(4):320-326. [CrossRef] [Medline]
- Victor A, Weis E, Messow CM, Marron M, Haaf T, Spix C, et al. Searching for gene expression differences in primary fibroblasts between patients with one and two neoplasms in childhood. Pediatr Hematol Oncol 2013 Feb 09;30(1):33-45. [CrossRef] [Medline]
- Sokolov M, Neumann R. Global gene expression alterations as a crucial constituent of human cell response to low doses of ionizing radiation exposure. Int J Mol Sci 2015 Dec 31;17(1):1 [FREE Full text] [CrossRef] [Medline]
|CMC: combined multivariate and collapsing|
|eQTLs: expression quantitative trait loci|
|FDR: false discovery rate|
|FPN: first primary neoplasm|
|GTEx: genotype-tissue expression|
|GWAS: genome-wide association study|
|ICCC-3: International Classification of Childhood Cancer, Third edition|
|ICGC: International Cancer Genome Consortium|
|IPA: Ingenuity Pathway Analysis|
|OR: odds ratio|
|PeCan: Pediatric Cancer Genomic Data Portal|
|Pedican: Pediatric cancer gene database|
|RVTEST: forest tests|
|SKAT: sequence Kernel association test|
|SNP: single nucleotide polymorphism|
|SNV: single-nucleotide variant|
|SPN: second primary neoplasm|
Edited by G Eysenbach; submitted 29.07.21; peer-reviewed by Y Li; comments to author 26.08.21; revised version received 07.09.21; accepted 07.09.21; published 11.11.21Copyright
©Manuela Marron, Lara Kim Brackmann, Heike Schwarz, Willempje Hummel-Bartenschlager, Sebastian Zahnreich, Danuta Galetzka, Iris Schmitt, Christian Grad, Philipp Drees, Johannes Hopf, Johanna Mirsch, Peter Scholz-Kreisel, Peter Kaatsch, Alicia Poplawski, Moritz Hess, Harald Binder, Thomas Hankeln, Maria Blettner, Heinz Schmidberger. Originally published in JMIR Research Protocols (https://www.researchprotocols.org), 11.11.2021.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Research Protocols, is properly cited. The complete bibliographic information, a link to the original publication on https://www.researchprotocols.org, as well as this copyright and license information must be included.